IL_5J8A_056

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_056 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.0162

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5J8A|1|AA|C|1259
5J8A|1|AA|G|1260
5J8A|1|AA|A|1261
5J8A|1|AA|C|1262
5J8A|1|AA|C|1263
*
5J8A|1|AA|G|1272
5J8A|1|AA|C|1273
5J8A|1|AA|A|1274
5J8A|1|AA|A|1275
5J8A|1|AA|G|1276

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19