IL_5J8A_122

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_122 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.0174

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5J8A|1|BA|C|1303
5J8A|1|BA|G|1304
5J8A|1|BA|G|1305
5J8A|1|BA|A|1306
5J8A|1|BA|U|1307
5J8A|1|BA|U|1308
*
5J8A|1|BA|A|1329
5J8A|1|BA|U|1330
5J8A|1|BA|G|1331
5J8A|1|BA|A|1332
5J8A|1|BA|A|1333
5J8A|1|BA|G|1334

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BM

30S ribosomal protein S13