IL_5J8A_136

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_136 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.065

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5J8A|1|CA|G|188
5J8A|1|CA|G|189
5J8A|1|CA|A|190
5J8A|1|CA|A|191
5J8A|1|CA|C|192
5J8A|1|CA|U|193
5J8A|1|CA|G|194
*
5J8A|1|CA|C|201
5J8A|1|CA|U|202
5J8A|1|CA|A|203
5J8A|1|CA|A|204
5J8A|1|CA|G|205
5J8A|1|CA|U|206
5J8A|1|CA|A|207
5J8A|1|CA|C|208

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CM

50S ribosomal protein L15

Chain CY

50S ribosomal protein L28