IL_5J8A_194

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5J8A|1|CA|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_194 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0405

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5J8A|1|CA|U|1712
5J8A|1|CA|A|1713
5J8A|1|CA|U|1714
5J8A|1|CA|G|1715
5J8A|1|CA|U|1716
5J8A|1|CA|A|1717
5J8A|1|CA|G|1718
*
5J8A|1|CA|U|1742
5J8A|1|CA|G|1743
5J8A|1|CA|A|1744
5J8A|1|CA|A|1745
5J8A|1|CA|A|1746

Current chains

Chain CA

23S rRNA

Nearby chains