IL_5J8A_294

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

5J8A|1|DA|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_294 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0326

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5J8A|1|DA|C|1417
5J8A|1|DA|G|1418
5J8A|1|DA|A|1419
5J8A|1|DA|A|1420
5J8A|1|DA|G|1421
*
5J8A|1|DA|C|1577
5J8A|1|DA|U|1578
5J8A|1|DA|A|1579
5J8A|1|DA|A|1580
5J8A|1|DA|G|1581

Current chains

Chain DA

23S rRNA

Nearby chains