IL_5J8A_318

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5J8A|1|DA|A|1938, 5J8A|1|DA|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_318 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1409

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5J8A|1|DA|C|1934
5J8A|1|DA|G|1935
5J8A|1|DA|A|1936
5J8A|1|DA|A|1937
5J8A|1|DA|A|1938
5J8A|1|DA|5MU|1939
5J8A|1|DA|U|1940
5J8A|1|DA|C|1941
5J8A|1|DA|C|1942
5J8A|1|DA|U|1943
5J8A|1|DA|U|1944
5J8A|1|DA|G|1945
*
5J8A|1|DA|C|1961
5J8A|1|DA|5MC|1962
5J8A|1|DA|U|1963
5J8A|1|DA|G|1964

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S ribosomal protein L2