IL_5J8A_322

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GU(7MG)A*UCC

Length

7 nucleotides

Bulged bases

5J8A|1|DA|U|2068

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_322 not in the Motif Atlas

Homologous match to IL_5J7L_323

Geometric discrepancy: 0.0325

The information below is about IL_5J7L_323

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8A|1|DA|G|2067
5J8A|1|DA|U|2068
5J8A|1|DA|7MG|2069
5J8A|1|DA|A|2070
*
5J8A|1|DA|U|2441
5J8A|1|DA|C|2442
5J8A|1|DA|C|2443

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15