IL_5J8A_338

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGG*C(PSU)GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_338 not in the Motif Atlas

Homologous match to IL_5J7L_339

Geometric discrepancy: 0.0293

The information below is about IL_5J7L_339

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8A|1|DA|C|2507
5J8A|1|DA|G|2508
5J8A|1|DA|G|2509
*
5J8A|1|DA|C|2579
5J8A|1|DA|PSU|2580
5J8A|1|DA|G|2581
5J8A|1|DA|G|2582

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DD

50S ribosomal protein L3