IL_5J8A_350

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_350 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.0272

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

5J8A|1|DA|C|2806
5J8A|1|DA|U|2807
5J8A|1|DA|G|2808
5J8A|1|DA|A|2809
5J8A|1|DA|A|2810
5J8A|1|DA|G|2811
*
5J8A|1|DA|C|2889
5J8A|1|DA|G|2890
5J8A|1|DA|U|2891
5J8A|1|DA|G|2892

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DT

50S ribosomal protein L22