IL_5J8A_352

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_352 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0318

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

5J8A|1|DA|G|2843
5J8A|1|DA|G|2844
5J8A|1|DA|U|2845
5J8A|1|DA|G|2846
*
5J8A|1|DA|C|2870
5J8A|1|DA|U|2871
5J8A|1|DA|A|2872
5J8A|1|DA|A|2873
5J8A|1|DA|C|2874

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DO

50S ribosomal protein L17

Chain DQ

50S ribosomal protein L19