IL_5J8A_371

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

5J8A|1|CA|U|846, 5J8A|1|CA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_371 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.2863

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5J8A|1|CA|A|844
5J8A|1|CA|A|845
5J8A|1|CA|U|846
5J8A|1|CA|U|847
5J8A|1|CA|C|848
*
5J8A|1|CA|G|930
5J8A|1|CA|U|931
5J8A|1|CA|U|932
5J8A|1|CA|A|933
5J8A|1|CA|U|934

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein L30