IL_5J8A_385

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUUG*CAUCA

Length

10 nucleotides

Bulged bases

5J8A|1|DA|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_385 not in the Motif Atlas

Homologous match to IL_5J7L_384

Geometric discrepancy: 0.0094

The information below is about IL_5J7L_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33835.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5J8A|1|DA|U|1058
5J8A|1|DA|G|1059
5J8A|1|DA|U|1060
5J8A|1|DA|U|1061
5J8A|1|DA|G|1062
*
5J8A|1|DA|C|1076
5J8A|1|DA|A|1077
5J8A|1|DA|U|1078
5J8A|1|DA|C|1079
5J8A|1|DA|A|1080

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DI

50S ribosomal protein L10

Chain DJ

50S ribosomal protein L11