IL_5J8A_390

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUG

Length

33 nucleotides

Bulged bases

5J8A|1|DA|U|2111, 5J8A|1|DA|A|2114, 5J8A|1|DA|G|2115, 5J8A|1|DA|G|2116, 5J8A|1|DA|A|2117, 5J8A|1|DA|U|2118, 5J8A|1|DA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J8A|1|DA|C|2103
5J8A|1|DA|C|2104
5J8A|1|DA|U|2105
5J8A|1|DA|U|2106
5J8A|1|DA|G|2107
5J8A|1|DA|A|2108
5J8A|1|DA|U|2109
5J8A|1|DA|G|2110
5J8A|1|DA|U|2111
5J8A|1|DA|G|2112
5J8A|1|DA|U|2113
5J8A|1|DA|A|2114
5J8A|1|DA|G|2115
5J8A|1|DA|G|2116
5J8A|1|DA|A|2117
5J8A|1|DA|U|2118
5J8A|1|DA|A|2119
5J8A|1|DA|G|2120
5J8A|1|DA|G|2121
5J8A|1|DA|U|2122
5J8A|1|DA|G|2123
*
5J8A|1|DA|C|2175
5J8A|1|DA|A|2176
5J8A|1|DA|C|2177
5J8A|1|DA|C|2178
5J8A|1|DA|C|2179
5J8A|1|DA|U|2180
5J8A|1|DA|U|2181
5J8A|1|DA|U|2182
5J8A|1|DA|A|2183
5J8A|1|DA|A|2184
5J8A|1|DA|U|2185
5J8A|1|DA|G|2186

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA