IL_5J8A_391

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5J8A|1|DA|A|2126, 5J8A|1|DA|G|2127, 5J8A|1|DA|A|2163, 5J8A|1|DA|C|2165, 5J8A|1|DA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_391 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.01

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5J8A|1|DA|G|2123
5J8A|1|DA|G|2124
5J8A|1|DA|G|2125
5J8A|1|DA|A|2126
5J8A|1|DA|G|2127
5J8A|1|DA|G|2128
*
5J8A|1|DA|C|2160
5J8A|1|DA|C|2161
5J8A|1|DA|G|2162
5J8A|1|DA|A|2163
5J8A|1|DA|C|2164
5J8A|1|DA|C|2165
5J8A|1|DA|U|2166
5J8A|1|DA|U|2167
5J8A|1|DA|G|2168
5J8A|1|DA|A|2169
5J8A|1|DA|A|2170
5J8A|1|DA|A|2171
5J8A|1|DA|U|2172
5J8A|1|DA|A|2173
5J8A|1|DA|C|2174
5J8A|1|DA|C|2175

Current chains

Chain DA

23S rRNA

Nearby chains