IL_5J8A_396

3D structure

PDB id

5J8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

5J8A|1|AA|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8A_396 not in the Motif Atlas

Homologous match to IL_5J7L_395

Geometric discrepancy: 0.0224

The information below is about IL_5J7L_395

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5J8A|1|AA|G|75
5J8A|1|AA|G|76
*
5J8A|1|AA|U|93
5J8A|1|AA|G|94
5J8A|1|AA|C|95

Current chains

Chain AA

16S rRNA

Nearby chains