IL_5J91_020

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0305

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5J91|1|AA|U|409
5J91|1|AA|G|410
5J91|1|AA|A|411
5J91|1|AA|A|412
5J91|1|AA|G|413
5J91|1|AA|A|414
5J91|1|AA|A|415
5J91|1|AA|G|416
*
5J91|1|AA|U|427
5J91|1|AA|G|428
5J91|1|AA|U|429
5J91|1|AA|A|430
5J91|1|AA|A|431
5J91|1|AA|A|432
5J91|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4