IL_5J91_103

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_103 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0278

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5J91|1|BA|C|779
5J91|1|BA|A|780
5J91|1|BA|A|781
5J91|1|BA|A|782
5J91|1|BA|C|783
*
5J91|1|BA|G|799
5J91|1|BA|G|800
5J91|1|BA|U|801
5J91|1|BA|A|802
5J91|1|BA|G|803

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BK

30S ribosomal protein S11

Chain BU

30S ribosomal protein S21

Chain CA

Large subunit ribosomal RNA; LSU rRNA