IL_5J91_116

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_116 not in the Motif Atlas

Homologous match to IL_5J7L_050

Geometric discrepancy: 0.085

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5J91|1|BA|G|1061
5J91|1|BA|U|1062
5J91|1|BA|C|1063
*
5J91|1|BA|G|1193
5J91|1|BA|U|1194
5J91|1|BA|C|1195

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BE

30S ribosomal protein S5

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14