IL_5J91_142

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

5J91|1|CA|A|504, 5J91|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_142 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0467

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

5J91|1|CA|G|481
5J91|1|CA|A|482
5J91|1|CA|A|483
5J91|1|CA|C|484
*
5J91|1|CA|G|496
5J91|1|CA|A|497
5J91|1|CA|G|498
5J91|1|CA|U|499
5J91|1|CA|G|500
5J91|1|CA|A|501
5J91|1|CA|A|502
5J91|1|CA|A|503
5J91|1|CA|A|504
5J91|1|CA|A|505
5J91|1|CA|G|506
5J91|1|CA|A|507
5J91|1|CA|A|508
5J91|1|CA|C|509

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CT

50S ribosomal protein L22

Chain CV

50S ribosomal protein L24