3D structure

PDB id
5J91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
Experimental method
X-RAY DIFFRACTION
Resolution
2.96 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
5J91|1|CA|A|1127, 5J91|1|CA|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5J91_167 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0517
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

5J91|1|CA|G|1024
5J91|1|CA|G|1025
5J91|1|CA|G|1026
5J91|1|CA|A|1027
5J91|1|CA|A|1028
5J91|1|CA|A|1029
5J91|1|CA|C|1030
*
5J91|1|CA|G|1124
5J91|1|CA|G|1125
5J91|1|CA|A|1126
5J91|1|CA|A|1127
5J91|1|CA|G|1128
5J91|1|CA|A|1129
5J91|1|CA|U|1130
5J91|1|CA|G|1131
5J91|1|CA|U|1132
5J91|1|CA|A|1133
5J91|1|CA|A|1134
5J91|1|CA|C|1135
5J91|1|CA|G|1136
5J91|1|CA|G|1137
5J91|1|CA|G|1138
5J91|1|CA|G|1139
5J91|1|CA|C|1140

Current chains

Chain CA
23S rRNA

Nearby chains

Chain C5
50S ribosomal protein L36
Chain CD
50S ribosomal protein L3
Chain CK
50S ribosomal protein L13
Chain CN
50S ribosomal protein L16

Coloring options:


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