3D structure

PDB id
5J91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
Experimental method
X-RAY DIFFRACTION
Resolution
2.96 Å

Loop

Sequence
UAUGUAG*UGAAA
Length
12 nucleotides
Bulged bases
5J91|1|CA|U|1714
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5J91_196 not in the Motif Atlas
Homologous match to IL_5J7L_309
Geometric discrepancy: 0.0403
The information below is about IL_5J7L_309
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

5J91|1|CA|U|1712
5J91|1|CA|A|1713
5J91|1|CA|U|1714
5J91|1|CA|G|1715
5J91|1|CA|U|1716
5J91|1|CA|A|1717
5J91|1|CA|G|1718
*
5J91|1|CA|U|1742
5J91|1|CA|G|1743
5J91|1|CA|A|1744
5J91|1|CA|A|1745
5J91|1|CA|A|1746

Current chains

Chain CA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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