IL_5J91_206

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5J91|1|CA|A|1938, 5J91|1|CA|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_206 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.1052

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

5J91|1|CA|C|1934
5J91|1|CA|G|1935
5J91|1|CA|A|1936
5J91|1|CA|A|1937
5J91|1|CA|A|1938
5J91|1|CA|5MU|1939
5J91|1|CA|U|1940
5J91|1|CA|C|1941
5J91|1|CA|C|1942
5J91|1|CA|U|1943
5J91|1|CA|U|1944
5J91|1|CA|G|1945
*
5J91|1|CA|C|1961
5J91|1|CA|5MC|1962
5J91|1|CA|U|1963
5J91|1|CA|G|1964

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2