IL_5J91_255

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5J91|1|DA|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_255 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.0224

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5J91|1|DA|C|274
5J91|1|DA|C|275
5J91|1|DA|U|276
5J91|1|DA|G|277
5J91|1|DA|A|278
5J91|1|DA|A|279
5J91|1|DA|U|280
5J91|1|DA|C|281
*
5J91|1|DA|G|359
5J91|1|DA|U|360
5J91|1|DA|G|361
5J91|1|DA|A|362
5J91|1|DA|G|363

Current chains

Chain DA

23S rRNA

Nearby chains