IL_5J91_320

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5J91|1|DA|C|2055, 5J91|1|DA|U|2613, 5J91|1|DA|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_320 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.0424

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

5J91|1|DA|A|2054
5J91|1|DA|C|2055
5J91|1|DA|G|2056
*
5J91|1|DA|C|2612
5J91|1|DA|U|2613
5J91|1|DA|A|2614
5J91|1|DA|U|2615

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DT

50S ribosomal protein L22