IL_5J91_327

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J91_327 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.0198

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5J91|1|DA|G|2107
5J91|1|DA|A|2108
5J91|1|DA|U|2109
5J91|1|DA|G|2110
5J91|1|DA|U|2111
5J91|1|DA|G|2112
5J91|1|DA|U|2113
5J91|1|DA|A|2114
5J91|1|DA|G|2115
5J91|1|DA|G|2116
5J91|1|DA|A|2117
5J91|1|DA|U|2118
5J91|1|DA|A|2119
5J91|1|DA|G|2120
5J91|1|DA|G|2121
5J91|1|DA|U|2122
5J91|1|DA|G|2123
*
5J91|1|DA|C|2175
5J91|1|DA|A|2176
5J91|1|DA|C|2177
5J91|1|DA|C|2178
5J91|1|DA|C|2179
5J91|1|DA|U|2180
5J91|1|DA|U|2181
5J91|1|DA|U|2182

Current chains

Chain DA

23S rRNA

Nearby chains