IL_5J91_391

3D structure

PDB id

5J91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Wild-type 70S E coli ribosome bound to Tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUG

Length

33 nucleotides

Bulged bases

5J91|1|DA|U|2111, 5J91|1|DA|A|2114, 5J91|1|DA|G|2115, 5J91|1|DA|G|2116, 5J91|1|DA|A|2117, 5J91|1|DA|U|2118, 5J91|1|DA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J91|1|DA|C|2103
5J91|1|DA|C|2104
5J91|1|DA|U|2105
5J91|1|DA|U|2106
5J91|1|DA|G|2107
5J91|1|DA|A|2108
5J91|1|DA|U|2109
5J91|1|DA|G|2110
5J91|1|DA|U|2111
5J91|1|DA|G|2112
5J91|1|DA|U|2113
5J91|1|DA|A|2114
5J91|1|DA|G|2115
5J91|1|DA|G|2116
5J91|1|DA|A|2117
5J91|1|DA|U|2118
5J91|1|DA|A|2119
5J91|1|DA|G|2120
5J91|1|DA|G|2121
5J91|1|DA|U|2122
5J91|1|DA|G|2123
*
5J91|1|DA|C|2175
5J91|1|DA|A|2176
5J91|1|DA|C|2177
5J91|1|DA|C|2178
5J91|1|DA|C|2179
5J91|1|DA|U|2180
5J91|1|DA|U|2181
5J91|1|DA|U|2182
5J91|1|DA|A|2183
5J91|1|DA|A|2184
5J91|1|DA|U|2185
5J91|1|DA|G|2186

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA