IL_5JC9_020

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0244

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5JC9|1|AA|U|409
5JC9|1|AA|G|410
5JC9|1|AA|A|411
5JC9|1|AA|A|412
5JC9|1|AA|G|413
5JC9|1|AA|A|414
5JC9|1|AA|A|415
5JC9|1|AA|G|416
*
5JC9|1|AA|U|427
5JC9|1|AA|G|428
5JC9|1|AA|U|429
5JC9|1|AA|A|430
5JC9|1|AA|A|431
5JC9|1|AA|A|432
5JC9|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4