IL_5JC9_025

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5JC9|1|AA|A|532, 5JC9|1|AA|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_025 not in the Motif Atlas

Homologous match to IL_5J7L_025

Geometric discrepancy: 0.045

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5JC9|1|AA|G|515
5JC9|1|AA|PSU|516
5JC9|1|AA|G|517
5JC9|1|AA|C|518
5JC9|1|AA|C|519
5JC9|1|AA|A|520
5JC9|1|AA|G|521
*
5JC9|1|AA|C|528
5JC9|1|AA|G|529
5JC9|1|AA|G|530
5JC9|1|AA|U|531
5JC9|1|AA|A|532
5JC9|1|AA|A|533
5JC9|1|AA|U|534
5JC9|1|AA|A|535
5JC9|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12