3D structure

PDB id
5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.03 Å

Loop

Sequence
CGACC*GCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5JC9_121 not in the Motif Atlas
Homologous match to IL_5J7L_056
Geometric discrepancy: 0.1233
The information below is about IL_5J7L_056
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

5JC9|1|BA|C|1259
5JC9|1|BA|G|1260
5JC9|1|BA|A|1261
5JC9|1|BA|C|1262
5JC9|1|BA|C|1263
*
5JC9|1|BA|G|1272
5JC9|1|BA|C|1273
5JC9|1|BA|A|1274
5JC9|1|BA|A|1275
5JC9|1|BA|G|1276

Current chains

Chain BA
16S rRNA

Nearby chains

Chain BN
30S ribosomal protein S14
Chain BS
30S ribosomal protein S19

Coloring options:


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