IL_5JC9_121

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_121 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1233

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5JC9|1|BA|C|1259
5JC9|1|BA|G|1260
5JC9|1|BA|A|1261
5JC9|1|BA|C|1262
5JC9|1|BA|C|1263
*
5JC9|1|BA|G|1272
5JC9|1|BA|C|1273
5JC9|1|BA|A|1274
5JC9|1|BA|A|1275
5JC9|1|BA|G|1276

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14

Chain BS

30S ribosomal protein S19