IL_5JC9_138

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_138 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.0619

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5JC9|1|CA|C|269
5JC9|1|CA|A|270
5JC9|1|CA|G|271
*
5JC9|1|CA|C|366
5JC9|1|CA|G|367
5JC9|1|CA|A|368
5JC9|1|CA|U|369
5JC9|1|CA|G|370

Current chains

Chain CA

23S rRNA

Nearby chains