IL_5JC9_139

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

5JC9|1|CA|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_139 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.0442

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5JC9|1|CA|C|274
5JC9|1|CA|C|275
5JC9|1|CA|U|276
5JC9|1|CA|G|277
5JC9|1|CA|A|278
5JC9|1|CA|A|279
5JC9|1|CA|U|280
5JC9|1|CA|C|281
*
5JC9|1|CA|G|359
5JC9|1|CA|U|360
5JC9|1|CA|G|361
5JC9|1|CA|A|362
5JC9|1|CA|G|363

Current chains

Chain CA

23S rRNA

Nearby chains