IL_5JC9_175

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_175 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0618

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5JC9|1|CA|A|1262
5JC9|1|CA|U|1263
5JC9|1|CA|A|1264
5JC9|1|CA|A|1265
5JC9|1|CA|G|1266
5JC9|1|CA|U|1267
5JC9|1|CA|A|1268
5JC9|1|CA|A|1269
*
5JC9|1|CA|U|2011
5JC9|1|CA|G|2012
5JC9|1|CA|A|2013
5JC9|1|CA|A|2014
5JC9|1|CA|A|2015
5JC9|1|CA|U|2016
5JC9|1|CA|U|2017

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CE

50S ribosomal protein L4

Chain CT

50S ribosomal protein L22