IL_5JC9_179

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_179 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0419

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5JC9|1|CA|C|1357
5JC9|1|CA|G|1358
5JC9|1|CA|A|1359
5JC9|1|CA|G|1360
5JC9|1|CA|G|1361
*
5JC9|1|CA|C|1370
5JC9|1|CA|G|1371
5JC9|1|CA|U|1372
5JC9|1|CA|A|1373
5JC9|1|CA|G|1374

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2

Chain CY

50S ribosomal protein L28