IL_5JC9_195

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

5JC9|1|CA|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_195 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0515

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5JC9|1|CA|U|1712
5JC9|1|CA|A|1713
5JC9|1|CA|U|1714
5JC9|1|CA|G|1715
5JC9|1|CA|U|1716
5JC9|1|CA|A|1717
5JC9|1|CA|G|1718
*
5JC9|1|CA|U|1742
5JC9|1|CA|G|1743
5JC9|1|CA|A|1744
5JC9|1|CA|A|1745
5JC9|1|CA|A|1746

Current chains

Chain CA

23S rRNA

Nearby chains