IL_5JC9_205

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5JC9|1|CA|A|1938, 5JC9|1|CA|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_205 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.113

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5JC9|1|CA|C|1934
5JC9|1|CA|G|1935
5JC9|1|CA|A|1936
5JC9|1|CA|A|1937
5JC9|1|CA|A|1938
5JC9|1|CA|5MU|1939
5JC9|1|CA|U|1940
5JC9|1|CA|C|1941
5JC9|1|CA|C|1942
5JC9|1|CA|U|1943
5JC9|1|CA|U|1944
5JC9|1|CA|G|1945
*
5JC9|1|CA|C|1961
5JC9|1|CA|5MC|1962
5JC9|1|CA|U|1963
5JC9|1|CA|G|1964

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2