IL_5JC9_219

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_219 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0445

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5JC9|1|CA|C|2350
5JC9|1|CA|G|2351
5JC9|1|CA|A|2352
5JC9|1|CA|G|2353
*
5JC9|1|CA|C|2364
5JC9|1|CA|G|2365
5JC9|1|CA|A|2366
5JC9|1|CA|G|2367

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C4

50S ribosomal protein L35

Chain CP

50S ribosomal protein L18

Chain CX

50S ribosomal protein L27