IL_5JC9_235

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

5JC9|1|CA|C|2712, 5JC9|1|CA|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_235 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.1221

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5JC9|1|CA|U|2695
5JC9|1|CA|U|2696
*
5JC9|1|CA|A|2711
5JC9|1|CA|C|2712
5JC9|1|CA|U|2713
5JC9|1|CA|G|2714

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CO

50S ribosomal protein L17

Chain CQ

50S ribosomal protein L19