IL_5JC9_273

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

5JC9|1|DA|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_273 not in the Motif Atlas

Homologous match to IL_5J7L_271

Geometric discrepancy: 0.0482

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

5JC9|1|DA|G|862
5JC9|1|DA|A|863
*
5JC9|1|DA|U|913
5JC9|1|DA|G|914
5JC9|1|DA|C|915

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DN

50S ribosomal protein L16

Chain DX

50S ribosomal protein L27