IL_5JC9_273
3D structure
- PDB id
- 5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.03 Å
Loop
- Sequence
- GA*UGC
- Length
- 5 nucleotides
- Bulged bases
- 5JC9|1|DA|G|914
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JC9_273 not in the Motif Atlas
- Homologous match to IL_5J7L_271
- Geometric discrepancy: 0.0482
- The information below is about IL_5J7L_271
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.14
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 50
Unit IDs
5JC9|1|DA|G|862
5JC9|1|DA|A|863
*
5JC9|1|DA|U|913
5JC9|1|DA|G|914
5JC9|1|DA|C|915
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DN
- 50S ribosomal protein L16
- Chain DX
- 50S ribosomal protein L27
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