IL_5JC9_332

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5JC9|1|DA|U|2131, 5JC9|1|DA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_332 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.0405

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5JC9|1|DA|C|2129
5JC9|1|DA|U|2130
5JC9|1|DA|U|2131
5JC9|1|DA|U|2132
5JC9|1|DA|G|2133
5JC9|1|DA|A|2134
5JC9|1|DA|A|2135
5JC9|1|DA|G|2136
*
5JC9|1|DA|U|2155
5JC9|1|DA|G|2156
5JC9|1|DA|G|2157
5JC9|1|DA|A|2158
5JC9|1|DA|G|2159

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BL

30S ribosomal protein S12