IL_5JC9_358

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CG*UAG

Length

5 nucleotides

Bulged bases

5JC9|1|DB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_358 not in the Motif Atlas

Homologous match to IL_5J7L_355

Geometric discrepancy: 0.0392

The information below is about IL_5J7L_355

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5JC9|1|DB|C|17
5JC9|1|DB|G|18
*
5JC9|1|DB|U|65
5JC9|1|DB|A|66
5JC9|1|DB|G|67

Current chains

Chain DB

5S rRNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA