IL_5JC9_377

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

5JC9|1|CA|U|846, 5JC9|1|CA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_377 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.2854

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5JC9|1|CA|A|844
5JC9|1|CA|A|845
5JC9|1|CA|U|846
5JC9|1|CA|U|847
5JC9|1|CA|C|848
*
5JC9|1|CA|G|930
5JC9|1|CA|U|931
5JC9|1|CA|U|932
5JC9|1|CA|A|933
5JC9|1|CA|U|934

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein L30