IL_5JC9_393

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

5JC9|1|DA|A|2126, 5JC9|1|DA|A|2163, 5JC9|1|DA|C|2165, 5JC9|1|DA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JC9_393 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.0388

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5JC9|1|DA|G|2123
5JC9|1|DA|G|2124
5JC9|1|DA|G|2125
5JC9|1|DA|A|2126
5JC9|1|DA|G|2127
5JC9|1|DA|G|2128
*
5JC9|1|DA|C|2160
5JC9|1|DA|C|2161
5JC9|1|DA|G|2162
5JC9|1|DA|A|2163
5JC9|1|DA|C|2164
5JC9|1|DA|C|2165
5JC9|1|DA|U|2166
5JC9|1|DA|U|2167
5JC9|1|DA|G|2168
5JC9|1|DA|A|2169
5JC9|1|DA|A|2170
5JC9|1|DA|A|2171
5JC9|1|DA|U|2172
5JC9|1|DA|A|2173
5JC9|1|DA|C|2174
5JC9|1|DA|C|2175

Current chains

Chain DA

23S rRNA

Nearby chains