IL_5JPQ_017

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_017 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.3922

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

5JPQ|1|2|C|443
5JPQ|1|2|C|444
5JPQ|1|2|A|445
5JPQ|1|2|A|446
5JPQ|1|2|U|447
*
5JPQ|1|2|A|460
5JPQ|1|2|G|461

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

eS24

Chain p

eS4