IL_5JPQ_020

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

AAUG*CCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_020 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.3245

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5JPQ|1|2|A|520
5JPQ|1|2|A|521
5JPQ|1|2|U|522
5JPQ|1|2|G|523
*
5JPQ|1|2|C|530
5JPQ|1|2|C|531
5JPQ|1|2|U|532

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

eS24