IL_5JPQ_026

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_026 not in the Motif Atlas

Geometric match to IL_3GM7_003

Geometric discrepancy: 0.2475

The information below is about IL_3GM7_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5JPQ|1|2|G|871
5JPQ|1|2|G|872
5JPQ|1|2|U|873
*
5JPQ|1|2|G|954
5JPQ|1|2|A|955
5JPQ|1|2|C|956

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain o

eS1