IL_5JPQ_029

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5JPQ|1|2|G|913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_029 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.4472

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

5JPQ|1|2|U|893
5JPQ|1|2|U|894
5JPQ|1|2|G|895
5JPQ|1|2|U|896
5JPQ|1|2|C|897
5JPQ|1|2|A|898
5JPQ|1|2|G|899
*
5JPQ|1|2|C|910
5JPQ|1|2|U|911
5JPQ|1|2|U|912
5JPQ|1|2|G|913
5JPQ|1|2|G|914
5JPQ|1|2|A|915
5JPQ|1|2|U|916
5JPQ|1|2|U|917
5JPQ|1|2|U|918
5JPQ|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

WD40 domain proteins

Chain o

eS1

Chain w

uS11