IL_5JPQ_032

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

5JPQ|1|2|C|1158, 5JPQ|1|2|C|1159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|2|A|1157
5JPQ|1|2|C|1158
5JPQ|1|2|C|1159
5JPQ|1|2|A|1160
*
5JPQ|1|2|U|1617
5JPQ|1|2|C|1618
5JPQ|1|2|C|1619
5JPQ|1|2|C|1620
5JPQ|1|2|U|1621

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

eS28

Chain J

WD40 domain proteins

Chain c

Putative U3 small nucleolar ribonucleoprotein

Chain q

uS7

Chain x

uS9