IL_5JPQ_033

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_033 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.2352

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5JPQ|1|2|C|1173
5JPQ|1|2|C|1174
5JPQ|1|2|U|1175
*
5JPQ|1|2|G|1464
5JPQ|1|2|C|1465
5JPQ|1|2|G|1466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

Putative U3 small nucleolar ribonucleoprotein

Chain x

uS9