IL_5JPQ_045

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GGGACG*CGUUUUC

Length

13 nucleotides

Bulged bases

5JPQ|1|2|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|2|G|866
5JPQ|1|2|G|867
5JPQ|1|2|G|868
5JPQ|1|2|A|869
5JPQ|1|2|C|870
5JPQ|1|2|G|871
*
5JPQ|1|2|C|956
5JPQ|1|2|G|957
5JPQ|1|2|U|958
5JPQ|1|2|U|959
5JPQ|1|2|U|960
5JPQ|1|2|U|961
5JPQ|1|2|C|962

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain v

uS15