IL_5JPQ_046
3D structure
- PDB id
- 5JPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.3 Å
Loop
- Sequence
- GGUUGAUGAACGAGAUC*GAAGUCUGAC
- Length
- 27 nucleotides
- Bulged bases
- 5JPQ|1|3|U|82, 5JPQ|1|3|U|83, 5JPQ|1|3|A|89, 5JPQ|1|3|A|92, 5JPQ|1|3|A|259, 5JPQ|1|3|G|260, 5JPQ|1|3|U|261
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JPQ|1|3|G|80
5JPQ|1|3|G|81
5JPQ|1|3|U|82
5JPQ|1|3|U|83
5JPQ|1|3|G|84
5JPQ|1|3|A|85
5JPQ|1|3|U|86
5JPQ|1|3|G|87
5JPQ|1|3|A|88
5JPQ|1|3|A|89
5JPQ|1|3|C|90
5JPQ|1|3|G|91
5JPQ|1|3|A|92
5JPQ|1|3|G|93
5JPQ|1|3|A|94
5JPQ|1|3|U|95
5JPQ|1|3|C|96
*
5JPQ|1|3|G|257
5JPQ|1|3|A|258
5JPQ|1|3|A|259
5JPQ|1|3|G|260
5JPQ|1|3|U|261
5JPQ|1|3|C|262
5JPQ|1|3|U|263
5JPQ|1|3|G|264
5JPQ|1|3|A|265
5JPQ|1|3|C|266
Current chains
- Chain 3
- U3 RNA
Nearby chains
- Chain C
- WD40 domain proteins
- Chain S
- Pre mRNA splicing protein
- Chain U
- Snu13
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